However transmission is often configured to delete source torrent files (from watch dir) after they are added. Directory location also specified in your settings.json. If you want to keep these you should back this up as well. Your source torrent files may also be getting "picked up" from a watch directory somewhere but you don't generally need to keep these. These should be specified in your transmission-daemon settings.json (location depends on your install but defaults to $HOME/.config/transmission-daemon/settings.json on linux I think). Incomplete/complete directories and files. There are several things to backup if you want a full backup/restore.
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